Selection of carbaryl and cypermethrin-specific DNA aptamers for quantitative detection using electrochemical aptasensor technique

Authors

  • adcharapun chaicharoen Biotechnology Research and Development Office, Department of Agriculture, Pathum Thani 12110
  • Malliga Thongkheaw Office of Agricultural and Development Region 4, Department of Agriculture, Ubon Ratchathani 34190
  • Ittipon Bongprom Office of Agricultural and Development Region 4, Department of Agriculture, Ubon Ratchathani 34190
  • Supapron Bongprom Office of Agricultural and Development Region 4, Department of Agriculture, Ubon Ratchathani 34190
  • Nattaya Jansong Office of Agricultural and Development Region 4, Department of Agriculture, Ubon Ratchathani 34190
  • Krittaya Petchpoung Scientific Equipment and Research Division, Kasetsart University Research and Development Institute, Kasetsart University, Bangkok 10900
  • Siriwan Soiklom Scientific Equipment and Research Division, Kasetsart University Research and Development Institute, Kasetsart University, Bangkok 10900

DOI:

https://doi.org/10.55164/jtai.v3i2.1229

Keywords:

DNA aptamer, Carbaryl, Cypermethrin, Pesticides, Biosensor

Abstract

          Testing for pesticide residue is a necessary step in the food safety production process. However, testing is complicated, time-consuming, and costly. Therefore, this research aimed to develop a simple and rapid method for pesticide residue detection. This study aimed to select DNA aptamers specific to carbaryl and cypermethrin for the development of an electrochemical aptasensor-based detection system. Carbaryl and cypermethrin standards were used as aptagen targets during aptamer selection via Systematic Evolution of Ligands by Exponential enrichment (SELEX) and indirect enzyme-linked aptamer assay(ELAA). A total of 13 and 22 DNA aptamer strands binding to carbaryl and cypermethrin, respectively, were successfully isolated. Among these, the carbaryl-binding aptamer Car26 and cypermethrin-binding aptamer Cyp126 were immobilized onto screen-printed gold electrodes (SPE gold) to construct biosensors for detecting pesticide residues in vegetables. The developed aptasensors demonstrated low detection limits (LOD) of 0.049 ppm for carbaryl and 0.044 ppm for cypermethrin. Compared to conventional chemical analysis methods, this electrochemical aptasensor offers lower cost, digital quantitative output, and user-friendly operation, making it a practical tool for rapid on-site screening.

References

Abu-Ali, H., Nabok A., and Smith, T.J. (2019). Development of Novel and Highly Specific ssDNA-Aptamer-Based Electrochemical Biosensor for Rapid Detection of Mercury (II) and Lead (II) Ions in Water. Chemosensors. 7(2), 27.

Barthelmebse, L., Jonca, J., HayatA., Simon, B.P., and Marty, J.L. (2011). Enzyme-linked aptamer assays (ELAAs), based on a competition format for a rapid and sensitive detection of Ochratoxin A in wine. Food Control. 22,737-743.

British Standards Institution (BSI). (2018). Foods of plant origin. Multimethod for the determination of pesticide residues using GC- and LC-based analysis following acetonitrile extraction/partitioning and clean-up by dispersive SPE. Modular QuEChERS-method. 84 pp.

Ellington, A.D., and Szostak, J.W. (1992). Selection in vitro of single-stranded DNA molecules that fold into specific ligand-binding structures. Nature. 355(6363), 850-852.

Hall, B., Arshad, S., Seo, K., Bowman, C., Corley, M., Jhaveri, S.D., and Ellington, A.D. (2009). In vitro selection of RNA aptamers to a protein target by filter immobilization. Current Protocols in Molecular Biology. 24(3),1-27.

Liu, M., Arshad, K., Zhifei, W., Yuan, L., Gaojian, Y., Yan, D., and Nongyue, H. (2019). Aptasensors for pesticide detection. Biosensors and Bioelectronics. 130, 174-184.

Liu, Y., Yang, G., Li, T., Deng, Y., Chen, Z., and He, N. (2021). Selection of a DNA aptamer for the development of fluorescent aptasensor for carbaryl detection. Chinese Chemical Letters. 32(6), 1957–1962.

Michaud, M., Jourdan, E., Villet,A., Ravel, A., Grosset, C., and Peyrin, E. (2003). A DNA Aptamer as a New Target-Specific Chiral Selector for HPLC. Journal of the American Chemical Society. 125 (28), 8672–8679.

Naghshbandi, B., Adabi, M., Pooshang Bagheri, K., and Tavakolipour, H. (2022). Design of a new electrochemical aptasensor based on screen printed carbon electrode modified with gold nanoparticles for the detection of fumonisin B1 in maize flour. Nanobiotechnology. 20, 534.

Phopin, K., and Tantimongcolwat, T. (2020). Pesticide Aptasensors—State of the Art and Perspectives. Sensors. 20(23), 6809.

Shahdordizadeh, M., Yazdian-Robati, R., Ansari, N., Ramezani, M., Abnous, K., and Taghdisi S. M. (2018). An aptamer-based colorimetric lead (II) assay based on the use of gold nanoparticles modified with dsDNA and exonuclease I. Microchimica Acta. 185(2).

Sindhu, S., and Manickavasagan, A. (2023). Nondestructive Testing Methods for Pesticide Residue in Food Commodities: A Review. Comprehensive Reviews in Food Science and Food Safety. 22, 1226–1256.

Song, K.M., Lee, S., and Ban, C. (2012). Aptamers and Their Biological Applications. Sensors. 12(12), 612–631.

Tuerk, C., and Gold, L. (1990). Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science. 249(4968), 505-510.

Wang, L., Liu, X., Zhang, Q., Zhang, C., Liu, Y., Tu, K., and Tu, J.(2012). Selection of DNA aptamers that bind to four organophosphorus pesticides. Biotechnology letters. 34(5), 869-74.

Wu, Y., Zhan, S., Wang, L., and Zhou, P. (2014). Selection of a DNA aptamer for cadmium detection based on cationic polymer mediated aggregation of gold nanoparticles. The Analyst. 139(6), 1550–1561.

Zhou, L., Li, D., Hu, J., and Wang, H. (2019). Effect of organic solvents on electrochemical aptamer sensors for pesticide detection. Electrochimica Acta. 296, 221–229.

Zhu, Y.F., Wang, Y.S., Zhou, B., Yu, J.H., Peng, L.L., Huang, Y.Q., and Wang, X.F. (2017). A multifunctional fluorescent aptamer probe for highly sensitive and selective detection of cadmium (II). Analytical and Bioanalytical Chemistry. 409(21), 4951–4958.

Downloads

Published

2025-11-19

How to Cite

chaicharoen, adcharapun, Thongkheaw, M., Bongprom, I., Bongprom, S., Jansong, N., Petchpoung, . K., & Soiklom, S. (2025). Selection of carbaryl and cypermethrin-specific DNA aptamers for quantitative detection using electrochemical aptasensor technique. Journal of Technology and Agricultural Innovation, 3(2). https://doi.org/10.55164/jtai.v3i2.1229

Issue

Section

Research Articles